RNA 3D Hub //

9J3T Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9J3T_0011/A/39:47tRNA anticodon loop
geometric
HL_6NTA_138
NA
HL_9J3T_0021/A/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0041/A/146:153No text annotation
HL_9J3T_0071/A/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6
HL_9J3T_0101/A/550:559No text annotation
HL_9J3T_0111/B/39:47tRNA anticodon loop
geometric
HL_4V90_033
NA
HL_9J3T_0121/B/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0141/B/146:153No text annotation
HL_9J3T_0151/B/228:234No text annotation
HL_9J3T_0171/B/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6
HL_9J3T_0211/C/39:47tRNA anticodon loop
geometric
HL_4V90_033
NA
HL_9J3T_0221/C/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0241/C/146:153No text annotation
HL_9J3T_0251/C/228:234No text annotation
HL_9J3T_0271/C/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6
HL_9J3T_0311/D/39:47tRNA anticodon loop
geometric
HL_4V90_033
NA
HL_9J3T_0321/D/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0341/D/146:153No text annotation
HL_9J3T_0371/D/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6
HL_9J3T_0411/E/39:47tRNA anticodon loop
geometric
HL_4V90_033
NA
HL_9J3T_0421/E/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0441/E/146:153No text annotation
HL_9J3T_0471/E/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6
HL_9J3T_0511/F/39:47tRNA anticodon loop
geometric
HL_4V90_033
NA
HL_9J3T_0521/F/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0541/F/146:153No text annotation
HL_9J3T_0551/F/228:234No text annotation
HL_9J3T_0561/F/259:267No text annotation
HL_9J3T_0571/F/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6
HL_9J3T_0601/F/550:559No text annotation
HL_9J3T_0611/G/39:47tRNA anticodon loop
geometric
HL_4V90_033
NA
HL_9J3T_0621/G/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0641/G/146:153No text annotation
HL_9J3T_0651/G/228:234No text annotation
HL_9J3T_0671/G/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6
HL_9J3T_0701/G/550:559No text annotation
HL_9J3T_0711/H/39:47tRNA anticodon loop
geometric
HL_4V90_033
NA
HL_9J3T_0721/H/92:97GNRA
geometric
HL_8P9A_147
NA
HL_9J3T_0741/H/146:153No text annotation
HL_9J3T_0771/H/316:321GNRA
geometric
HL_6CB3_006
HL_34789.6

Problematic loops

#loop idProblemSequence
HL_9J3T_003GNRA
HL_9J3T_005No text annotation
HL_9J3T_006No text annotation
HL_9J3T_008No text annotation
HL_9J3T_009GNRA
HL_9J3T_013GNRA
HL_9J3T_016No text annotation
HL_9J3T_018No text annotation
HL_9J3T_019GNRA
HL_9J3T_020No text annotation
HL_9J3T_023GNRA
HL_9J3T_026No text annotation
HL_9J3T_028No text annotation
HL_9J3T_029GNRA
HL_9J3T_030No text annotation
HL_9J3T_033GNRA
HL_9J3T_035No text annotation
HL_9J3T_036No text annotation
HL_9J3T_038No text annotation
HL_9J3T_039GNRA
HL_9J3T_040No text annotation
HL_9J3T_043GNRA
HL_9J3T_045No text annotation
HL_9J3T_046No text annotation
HL_9J3T_048No text annotation
HL_9J3T_049GNRA
HL_9J3T_050No text annotation
HL_9J3T_053GNRA
HL_9J3T_058No text annotation
HL_9J3T_059GNRA
HL_9J3T_063GNRA
HL_9J3T_066No text annotation
HL_9J3T_068No text annotation
HL_9J3T_069GNRA
HL_9J3T_073GNRA
HL_9J3T_075No text annotation
HL_9J3T_076No text annotation
HL_9J3T_078No text annotation
HL_9J3T_079GNRA
HL_9J3T_080No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9J3T_0011/A/29:36,
1/A/50:52		No text annotation
IL_9J3T_0021/A/63:73,
1/A/162:167		No text annotation
IL_9J3T_0031/A/85:87,
1/A/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_0041/A/114:118,
1/A/135:139		No text annotation
IL_9J3T_0061/A/184:189,
1/A/531:537		No text annotation
IL_9J3T_0071/A/192:195,
1/A/522:528		No text annotation
IL_9J3T_0081/A/247:252,
1/A/273:278		No text annotation
IL_9J3T_0101/A/306:312,
1/A/325:359		No text annotation
IL_9J3T_0111/A/436:437,
1/A/451:453		Single bulged G
geometric
IL_3NDB_004
NA
IL_9J3T_0151/B/29:36,
1/B/50:52		No text annotation
IL_9J3T_0161/B/63:73,
1/B/162:167		No text annotation
IL_9J3T_0171/B/85:87,
1/B/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_0181/B/114:118,
1/B/135:139		No text annotation
IL_9J3T_0201/B/184:189,
1/B/531:537		No text annotation
IL_9J3T_0211/B/192:195,
1/B/522:528		No text annotation
IL_9J3T_0221/B/247:252,
1/B/273:278		No text annotation
IL_9J3T_0241/B/306:312,
1/B/325:359		No text annotation
IL_9J3T_0251/B/436:437,
1/B/451:453		Single bulged G
geometric
IL_3NDB_004
NA
IL_9J3T_0291/C/29:36,
1/C/50:52		No text annotation
IL_9J3T_0301/C/63:73,
1/C/162:167		No text annotation
IL_9J3T_0311/C/85:87,
1/C/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_0321/C/114:118,
1/C/135:139		No text annotation
IL_9J3T_0331/C/175:180,
1/C/541:546		Quadruple sheared
geometric
IL_3R9W_001
IL_29495.2
IL_9J3T_0341/C/184:189,
1/C/531:537		No text annotation
IL_9J3T_0351/C/192:195,
1/C/522:528		No text annotation
IL_9J3T_0361/C/247:252,
1/C/273:278		No text annotation
IL_9J3T_0381/C/306:312,
1/C/325:359		No text annotation
IL_9J3T_0391/C/436:437,
1/C/451:453		Single bulged G
geometric
IL_3NDB_004
NA
IL_9J3T_0431/D/29:36,
1/D/50:52		No text annotation
IL_9J3T_0441/D/63:73,
1/D/162:167		No text annotation
IL_9J3T_0451/D/85:87,
1/D/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_0461/D/114:118,
1/D/135:139		No text annotation
IL_9J3T_0481/D/184:189,
1/D/531:537		No text annotation
IL_9J3T_0491/D/192:195,
1/D/522:528		No text annotation
IL_9J3T_0501/D/247:252,
1/D/273:278		No text annotation
IL_9J3T_0521/D/306:312,
1/D/325:359		No text annotation
IL_9J3T_0531/D/436:437,
1/D/451:453		Single bulged G
geometric
IL_3NDB_004
NA
IL_9J3T_0571/E/29:36,
1/E/50:52		No text annotation
IL_9J3T_0581/E/63:73,
1/E/162:167		No text annotation
IL_9J3T_0591/E/85:87,
1/E/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_0601/E/114:118,
1/E/135:139		No text annotation
IL_9J3T_0621/E/184:189,
1/E/531:537		No text annotation
IL_9J3T_0631/E/192:195,
1/E/522:528		No text annotation
IL_9J3T_0641/E/247:252,
1/E/273:278		No text annotation
IL_9J3T_0661/E/306:312,
1/E/325:359		No text annotation
IL_9J3T_0671/E/436:437,
1/E/451:453		Single bulged G
geometric
IL_3NDB_004
NA
IL_9J3T_0711/F/29:36,
1/F/50:52		No text annotation
IL_9J3T_0721/F/63:73,
1/F/162:167		No text annotation
IL_9J3T_0731/F/85:87,
1/F/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_0741/F/114:118,
1/F/135:139		No text annotation
IL_9J3T_0761/F/184:189,
1/F/531:537		No text annotation
IL_9J3T_0771/F/192:195,
1/F/522:528		No text annotation
IL_9J3T_0781/F/247:252,
1/F/273:278		No text annotation
IL_9J3T_0801/F/306:312,
1/F/325:359		No text annotation
IL_9J3T_0811/F/436:437,
1/F/451:453		Single bulged G
geometric
IL_3NDB_004
NA
IL_9J3T_0851/G/29:36,
1/G/50:52		No text annotation
IL_9J3T_0861/G/63:73,
1/G/162:167		No text annotation
IL_9J3T_0871/G/85:87,
1/G/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_0881/G/114:118,
1/G/135:139		No text annotation
IL_9J3T_0901/G/184:189,
1/G/531:537		No text annotation
IL_9J3T_0911/G/192:195,
1/G/522:528		No text annotation
IL_9J3T_0941/G/306:312,
1/G/325:359		No text annotation
IL_9J3T_0951/G/436:437,
1/G/451:453		Single bulged G
geometric
IL_3NDB_004
NA
IL_9J3T_0991/H/29:36,
1/H/50:52		No text annotation
IL_9J3T_1001/H/63:73,
1/H/162:167		No text annotation
IL_9J3T_1011/H/85:87,
1/H/102:104		Isolated cWH basepair
geometric
IL_3R1D_014
IL_10892.4
IL_9J3T_1021/H/114:118,
1/H/135:139		No text annotation
IL_9J3T_1041/H/184:189,
1/H/531:537		No text annotation
IL_9J3T_1051/H/192:195,
1/H/522:528		No text annotation
IL_9J3T_1061/H/247:252,
1/H/273:278		No text annotation
IL_9J3T_1081/H/306:312,
1/H/325:359		No text annotation
IL_9J3T_1091/H/436:437,
1/H/451:453		Single bulged G
geometric
IL_3NDB_004
NA

Problematic loops

#loop idProblemSequence
IL_9J3T_005Quadruple sheared
IL_9J3T_009No text annotation
IL_9J3T_012No text annotation
IL_9J3T_013No text annotation
IL_9J3T_014No text annotation
IL_9J3T_019Quadruple sheared
IL_9J3T_023No text annotation
IL_9J3T_026No text annotation
IL_9J3T_027No text annotation
IL_9J3T_028No text annotation
IL_9J3T_037No text annotation
IL_9J3T_040No text annotation
IL_9J3T_041No text annotation
IL_9J3T_042No text annotation
IL_9J3T_047Quadruple sheared
IL_9J3T_051No text annotation
IL_9J3T_054No text annotation
IL_9J3T_055No text annotation
IL_9J3T_056No text annotation
IL_9J3T_061Quadruple sheared
IL_9J3T_065No text annotation
IL_9J3T_068No text annotation
IL_9J3T_069No text annotation
IL_9J3T_070No text annotation
IL_9J3T_075Quadruple sheared
IL_9J3T_079No text annotation
IL_9J3T_082No text annotation
IL_9J3T_083No text annotation
IL_9J3T_084No text annotation
IL_9J3T_089Quadruple sheared
IL_9J3T_092No text annotation
IL_9J3T_093No text annotation
IL_9J3T_096No text annotation
IL_9J3T_097No text annotation
IL_9J3T_098No text annotation
IL_9J3T_103Quadruple sheared
IL_9J3T_107No text annotation
IL_9J3T_110No text annotation
IL_9J3T_111No text annotation
IL_9J3T_112No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9J3T_0011/A/214:226,
1/A/236:242,
1/A/283:297		No text annotation
J3_9J3T_0031/C/214:226,
1/C/236:242,
1/C/283:297		No text annotation
J3_9J3T_0041/D/214:226,
1/D/236:242,
1/D/283:297		No text annotation
J3_9J3T_0051/E/214:226,
1/E/236:242,
1/E/283:297		No text annotation
J3_9J3T_0071/G/214:226,
1/G/236:242,
1/G/283:297		No text annotation
J4_9J3T_0011/A/74:78,
1/A/111:113,
1/A/140:141,
1/A/158:161		No text annotation
J4_9J3T_0021/B/74:78,
1/B/111:113,
1/B/140:141,
1/B/158:161		No text annotation
J4_9J3T_0031/C/74:78,
1/C/111:113,
1/C/140:141,
1/C/158:161		No text annotation
J4_9J3T_0041/D/74:78,
1/D/111:113,
1/D/140:141,
1/D/158:161		No text annotation
J4_9J3T_0051/E/74:78,
1/E/111:113,
1/E/140:141,
1/E/158:161		No text annotation
J4_9J3T_0061/F/74:78,
1/F/111:113,
1/F/140:141,
1/F/158:161		No text annotation
J4_9J3T_0071/G/74:78,
1/G/111:113,
1/G/140:141,
1/G/158:161		No text annotation
J4_9J3T_0081/H/74:78,
1/H/111:113,
1/H/140:141,
1/H/158:161		No text annotation
J5_9J3T_0011/A/22:25,
1/A/56:57,
1/A/173:174,
1/A/547:549,
1/A/560:561		No text annotation
J5_9J3T_0021/B/22:25,
1/B/56:57,
1/B/173:174,
1/B/547:549,
1/B/560:561		No text annotation
J5_9J3T_0031/C/22:25,
1/C/56:57,
1/C/173:174,
1/C/547:549,
1/C/560:561		No text annotation
J5_9J3T_0041/D/22:25,
1/D/56:57,
1/D/173:174,
1/D/547:549,
1/D/560:561		No text annotation
J5_9J3T_0051/E/22:25,
1/E/56:57,
1/E/173:174,
1/E/547:549,
1/E/560:561		No text annotation
J5_9J3T_0061/F/22:25,
1/F/56:57,
1/F/173:174,
1/F/547:549,
1/F/560:561		No text annotation
J5_9J3T_0071/G/22:25,
1/G/56:57,
1/G/173:174,
1/G/547:549,
1/G/560:561		No text annotation
J5_9J3T_0081/H/22:25,
1/H/56:57,
1/H/173:174,
1/H/547:549,
1/H/560:561		No text annotation

Problematic loops

#loop idProblemSequence
J3_9J3T_002No text annotation
J3_9J3T_006No text annotation
J3_9J3T_008No text annotation

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